NLP and Ruby to characterize quality of writing - ruby-on-rails

I'd like to take a shot at characterizing incoming documents in my app as either "well" or "poorly" written. I realize this is no easy task, but even a rough idea would be useful. I feel like the way to do this would be via naïve Bayes classifier with two classes, but am open to suggestions. So two questions:
is this method the optimal (taking into account simplicity) way to do this
assuming a large enough training db?
are there libraries in ruby
(or any integratable JRuby or
whatever) that i can plug into my
rails app to make this happen with little fuss?
Thanks!

You might try using vocabulary vector analysis. Covered some here:
http://en.wikipedia.org/wiki/Semantic_similarity
Basically you build up a corpus of texts that you deem "well-written" or "poorly-written" and count the frequency of certain words. Make a normalized vector for each, and then compute the distance between those to the vectors of each incoming document. I am not a statistician, but I'm told it's similar to Bayesian filtering, but seems to deal with misspellings and outliers better.
This is not perfect, by any means. Depending on how accurate you need it to be, you will probably still need humans to make the final judgement. But we've had good luck using it as a pre-filter to reduce number of reviewers.

Another simple algorithm to check out is the Flesch-Kincaid readability metric. It is quite widely used and should be easy to implement. I assume one of the Ruby NLP libraries has syllable methods.

You may find interesting this Burstein, Chodorow, and Leacock on the Criterion essay evaluation system for a pretty interesting very high-level overview of how one particular system did essay evaluation as well as style correction.

Related

How to give a logical reason for choosing a model

I used machine learning to train depression related sentences. And it was LinearSVC that performed best. In addition to LinearSVC, I experimented with MultinomialNB and LogisticRegression, and I chose the model with the highest accuracy among the three. By the way, what I want to do is to be able to think in advance which model will fit, like ml_map provided by Scikit-learn. Where can I get this information? I searched a few papers, but couldn't find anything that contained more detailed information other than that SVM was suitable for text classification. How do I study to get prior knowledge like this ml_map?
How do I study to get prior knowledge like this ml_map?
Try to work with different example datasets on different data types by using different algorithms. There are hundreds to be explored. Once you get the good grasp of how they work, it will become more clear. And do not forget to try googling something like advantages of algorithm X, it helps a lot.
And here are my thoughts, I think I used to ask such questions before and I hope it can help if you are struggling: The more you work on different Machine Learning models for a specific problem, you will soon realize that data and feature engineering play the more important parts than the algorithms themselves. The road map provided by scikit-learn gives you a good view of what group of algorithms to use to deal with certain types of data and that is a good start. The boundaries between them, however, are rather subtle. In other words, one problem can be solved by different approaches depending on how you organize and engineer your data.
To sum it up, in order to achieve a good out-of-sample (i.e., good generalization) performance while solving a problem, it is mandatory to look at the training/testing process with different setting combinations and be mindful with your data (for example, answer this question: does it cover most samples in terms of distribution in the wild or just a portion of it?)

Practical advice on dealing with very long inputs using LSTM model?

I built a character-level LSTM model on text data, but ultimately I'm looking to apply this model on very long text documents (such as a novel) where it's important to understand contextual information, such as where in the novel it's in.
For these large-scale NLP tasks, is the data usually cut into smaller pieces and concatenated with metadata - such as position within the document, detected topic, etc. - to be fed into the model? Or are there more elegant techniques?
Personally, I have not gone that in depth with using LSTMs to go into the level of depth that you are trying to attain but I do have some suggestions.
One solution to your problem, which you mentioned above, could be to simply analyze different pieces of the document by splitting your document into smaller pieces and analyzing them that way. You'll probably have to be creative.
Another solution, that I think might be of interest of you is to uses a Tree LSTM model in order to get the level to depth. Here's the link to the paper Using the Tree model you could feed in individual characters or words on the lowest level and then feed it upward to higher levels of abstraction. Again, I am not completely familiar with the model, so don't take my word on it, but it could be a possible solution.
Adding few more ideas in answer pointed by bhaskar, which are used to handle this problem.
You can used Attention mechanism, which is used to deal with long term dependencies. Because for a long sequence, it certainly forget information or its next prediction may not depend on all the sequence information, it has in its cell. So attention mechanism helps to find the reasonable weights for the characters, it depend on. For more info you can check this link
There is potentially lots of research on this problem. This is very recent paper on this problem.
You can also break the sequence and use seq2seq model, which encode the features into low dims space and then decoder will extract it . This is short-article on this.
My personal advice is to break the sequence and then train it, because sliding window on the complete sequence is pretty much able to find the correlation between each sequence.

Classifying URLs into categories - Machine Learning

[I'm approaching this as an outsider to machine learning. It just seems like a classification problem which I should be able to solve with fairly good accuracy with Machine Larning.]
Training Dataset:
I have millions of URLs, each tagged with a particular category. There are limited number of categories (50-100).
Now given a fresh URL, I want to categorize it into one of those categories. The category can be determined from the URL using conventional methods, but would require a huge unmanageable mess of pattern matching.
So I want to build a box where INPUT is URL, OUTPUT is Category. How do I build this box driven by ML?
As much as I would love to understand the basic fundamentals of how this would work out mathematically, right now much much more focussed on getting it done, so a conceptual understanding of the systems and processes involved is what I'm looking to get. I suppose machine learning is at a point where you can approach reasonably straight forward problems in that manner.
If you feel I'm wrong and I need to understand the foundations deeply in order to get value out of ML, do let me know.
I'm building this inside an AWS ecosystem so I'm open to using Amazon ML if it makes things quicker and simpler.
I suppose machine learning is at a point where you can approach reasonably straight forward problems in that manner.
It is not. Building an effective ML solution requires both an understanding of problem scope/constraints (in your case, new categories over time? Runtime requirements? Execution frequency? Latency requirements? Cost of errors? and more!). These constraints will then impact what types of feature engineering / processing you may look at, and what types of models you will look at. Your particular problem may also have issues with non I.I.D. data, which is an assumption of most ML methods. This would impact how you evaluate the accuracy of your model.
If you want to learn enough ML to do this problem, you might want to start looking at work done in Malicious URL classification. An example of which can be found here. While you could "hack" your way to something without learning more about ML, I would not personally trust any solution built in that manner.
If you feel I'm wrong and I need to understand the foundations deeply in order to get value out of ML, do let me know.
Okay, I'll bite.
There are really two schools of thought currently related to prediction: "machine learners" versus statisticians. The former group focuses almost entirely on practical and applied prediction, using techniques like k-fold cross-validation, bagging, etc., while the latter group is focused more on statistical theory and research methods. You seem to fall into the machine-learning camp, which is fine, but then you say this:
As much as I would love to understand the basic fundamentals of how this would work out mathematically, right now much much more focussed on getting it done, so a conceptual understanding of the systems and processes involved is what I'm looking to get.
While a "conceptual understanding of the systems and processes involved" is a prerequisite for doing advanced analytics, it isn't sufficient if you're the one conducting the analysis (it would be sufficient for a manager, who's not as close to the modeling).
With just a general idea of what's going on, say, in a logistic regression model, you would likely throw all statistical assumptions (which are important) to the wind. Do you know whether certain features or groups shouldn't be included because there aren't enough observations in that group for the test statistic to be valid? What can happen to your predictions and hypotheses when you have high variance-inflation factors?
These are important considerations when doing statistics, and oftentimes people see how easy it is to do from sklearn.svm import SVC or somthing like that and run wild. That's how you get caught with your pants around your ankles.
How do I build this box driven by ML?
You don't seem to have even a rudimentary understanding of how to approach machine/statistical learning problems. I would highly recommend that you take an "Introduction to Statistical Learning"- or "Intro to Regression Modeling"-type course in order to think about how you translate the URLs you have into meaningful features that have significant power predicting URL class. Think about how you can decompose a URL into individual pieces that might give some information as to which class a certain URL pertains. If you're classifying espn.com domains by sport, it'd be pretty important to parse nba out of http://www.espn.com/nba/team/roster/_/name/cle, don't you think?
Good luck with your project.
Edit:
To nudge you along, though: every ML problem boils down to some function mapping input to output. Your outputs are URL classes. Your inputs are URLs. However, machines only understand numbers, right? URLs aren't numbers (AFAIK). So you'll need to find a way to translate information contained in the URLs to what we call "features" or "variables." One place to start, there, would be one-hot encoding different parts of each URL. Think of why I mentioned the ESPN example above, and why I extracted info like nba from the URL. I did that because, if I'm trying to predict to which sport a given URL pertains, nba is a dead giveaway (i.e. it would very likely be highly predictive of sport).

What subjects, topics does a computer science graduate need to learn to apply available machine learning frameworks, esp. SVMs

I want to teach myself enough machine learning so that I can, to begin with, understand enough to put to use available open source ML frameworks that will allow me to do things like:
Go through the HTML source of pages
from a certain site and "understand"
which sections form the content,
which the advertisements and which
form the metadata ( neither the
content, nor the ads - for eg. -
TOC, author bio etc )
Go through the HTML source of pages
from disparate sites and "classify"
whether the site belongs to a
predefined category or not ( list of
categories will be supplied
beforhand )1.
... similar classification tasks on
text and pages.
As you can see, my immediate requirements are to do with classification on disparate data sources and large amounts of data.
As far as my limited understanding goes, taking the neural net approach will take a lot of training and maintainance than putting SVMs to use?
I understand that SVMs are well suited to ( binary ) classification tasks like mine, and open source framworks like libSVM are fairly mature?
In that case, what subjects and topics
does a computer science graduate need
to learn right now, so that the above
requirements can be solved, putting
these frameworks to use?
I would like to stay away from Java, is possible, and I have no language preferences otherwise. I am willing to learn and put in as much effort as I possibly can.
My intent is not to write code from scratch, but, to begin with putting the various frameworks available to use ( I do not know enough to decide which though ), and I should be able to fix things should they go wrong.
Recommendations from you on learning specific portions of statistics and probability theory is nothing unexpected from my side, so say that if required!
I will modify this question if needed, depending on all your suggestions and feedback.
"Understanding" in machine learn is the equivalent of having a model. The model can be for example a collection of support vectors, the layout and weights of a neural network, a decision tree, or more. Which of these methods work best really depends on the subject you're learning from and on the quality of your training data.
In your case, learning from a collection of HTML sites, you will like to preprocess the data first, this step is also called "feature extraction". That is, you extract information out of the page you're looking at. This is a difficult step, because it requires domain knowledge and you'll have to extract useful information, or otherwise your classifiers will not be able to make good distinctions. Feature extraction will give you a dataset (a matrix with features for each row) from which you'll be able to create your model.
Generally in machine learning it is advised to also keep a "test set" that you do not train your models with, but that you will use at the end to decide on what is the best method. It is of extreme importance that you keep the test set hidden until the very end of your modeling step! The test data basically gives you a hint on the "generalization error" that your model is making. Any model with enough complexity and learning time tends to learn exactly the information that you train it with. Machine learners say that the model "overfits" the training data. Such overfitted models seem to appear good, but this is just memorization.
While software support for preprocessing data is very sparse and highly domain dependent, as adam mentioned Weka is a good free tool for applying different methods once you have your dataset. I would recommend reading several books. Vladimir Vapnik wrote "The Nature of Statistical Learning Theory", he is the inventor of SVMs. You should get familiar with the process of modeling, so a book on machine learning is definitely very useful. I also hope that some of the terminology might be helpful to you in finding your way around.
Seems like a pretty complicated task to me; step 2, classification, is "easy" but step 1 seems like a structure learning task. You might want to simplify it to classification on parts of HTML trees, maybe preselected by some heuristic.
The most widely used general machine learning library (freely) available is probably WEKA. They have a book that introduces some ML concepts and covers how to use their software. Unfortunately for you, it is written entirely in Java.
I am not really a Python person, but it would surprise me if there aren't also a lot of tools available for it as well.
For text-based classification right now Naive Bayes, Decision Trees (J48 in particular I think), and SVM approaches are giving the best results. However they are each more suited for slightly different applications. Off the top of my head I'm not sure which would suit you the best. With a tool like WEKA you could try all three approaches with some example data without writing a line of code and see for yourself.
I tend to shy away from Neural Networks simply because they can get very very complicated quickly. Then again, I haven't tried a large project with them mostly because they have that reputation in academia.
Probability and statistics knowledge is only required if you are using probabilistic algorithms (like Naive Bayes). SVMs are generally not used in a probabilistic manner.
From the sound of it, you may want to invest in an actual pattern classification textbook or take a class on it in order to find exactly what you are looking for. For custom/non-standard data sets it can be tricky to get good results without having a survey of existing techniques.
It seems to me that you are now entering machine learning field, so I'd really like to suggest to have a look at this book: not only it provides a deep and vast overview on the most common machine learning approaches and algorithms (and their variations) but it also provides a very good set of exercises and scientific paper links. All of this is wrapped in an insightful language starred with a minimal and yet useful compendium about statistics and probability

What's the best approach to recognize patterns in data, and what's the best way to learn more on the topic?

A developer I am working with is developing a program that analyzes images of pavement to find cracks in the pavement. For every crack his program finds, it produces an entry in a file that tells me which pixels make up that particular crack. There are two problems with his software though:
1) It produces several false positives
2) If he finds a crack, he only finds small sections of it and denotes those sections as being separate cracks.
My job is to write software that will read this data, analyze it, and tell the difference between false-positives and actual cracks. I also need to determine how to group together all the small sections of a crack as one.
I have tried various ways of filtering the data to eliminate false-positives, and have been using neural networks to a limited degree of success to group cracks together. I understand there will be error, but as of now, there is just too much error. Does anyone have any insight for a non-AI expert as to the best way to accomplish my task or learn more about it? What kinds of books should I read, or what kind of classes should I take?
EDIT My question is more about how to notice patterns in my coworker's data and identify those patterns as actual cracks. It's the higher-level logic that I'm concerned with, not so much the low-level logic.
EDIT In all actuality, it would take AT LEAST 20 sample images to give an accurate representation of the data I'm working with. It varies a lot. But I do have a sample here, here, and here. These images have already been processed by my coworker's process. The red, blue, and green data is what I have to classify (red stands for dark crack, blue stands for light crack, and green stands for a wide/sealed crack).
In addition to the useful comments about image processing, it also sounds like you're dealing with a clustering problem.
Clustering algorithms come from the machine learning literature, specifically unsupervised learning. As the name implies, the basic idea is to try to identify natural clusters of data points within some large set of data.
For example, the picture below shows how a clustering algorithm might group a bunch of points into 7 clusters (indicated by circles and color):
(source: natekohl.net)
In your case, a clustering algorithm would attempt to repeatedly merge small cracks to form larger cracks, until some stopping criteria is met. The end result would be a smaller set of joined cracks. Of course, cracks are a little different than two-dimensional points -- part of the trick in getting a clustering algorithm to work here will be defining a useful distance metric between two cracks.
Popular clustering algorithms include k-means clustering (demo) and hierarchical clustering. That second link also has a nice step-by-step explanation of how k-means works.
EDIT: This paper by some engineers at Phillips looks relevant to what you're trying to do:
Chenn-Jung Huang, Chua-Chin Wang, Chi-Feng Wu, "Image Processing Techniques for Wafer Defect Cluster Identification," IEEE Design and Test of Computers, vol. 19, no. 2, pp. 44-48, March/April, 2002.
They're doing a visual inspection for defects on silicon wafers, and use a median filter to remove noise before using a nearest-neighbor clustering algorithm to detect the defects.
Here are some related papers/books that they cite that might be useful:
M. Taubenlatt and J. Batchelder, “Patterned Wafer Inspection Using Spatial Filtering for Cluster Environment,” Applied Optics, vol. 31, no. 17, June 1992, pp. 3354-3362.
F.-L. Chen and S.-F. Liu, “A Neural-Network Approach to Recognize Defect Spatial Pattern in Semiconductor Fabrication.” IEEE Trans. Semiconductor Manufacturing, vol. 13, no. 3, Aug. 2000, pp. 366-373.
G. Earl, R. Johnsonbaugh, and S. Jost, Pattern Recognition and Image Analysis, Prentice Hall, Upper Saddle River, N.J., 1996.
Your problem falls in the very broad field of image classification. These types of problems can be notoriously difficult, and at the end of the day, solving them is an art. You must exploit every piece of knowledge you have about the problem domain to make it tractable.
One fundamental issue is normalization. You want to have similarly classified objects to be as similar as possible in their data representation. For example, if you have an image of the cracks, do all images have the same orientation? If not, then rotating the image may help in your classification. Similarly, scaling and translation (refer to this)
You also want to remove as much irrelevant data as possible from your training sets. Rather than directly working on the image, perhaps you could use edge extraction (for example Canny edge detection). This will remove all the 'noise' from the image, leaving only the edges. The exercise is then reduced to identifying which edges are the cracks and which are the natural pavement.
If you want to fast track to a solution then I suggest you first try the your luck with a Convolutional Neural Net, which can perform pretty good image classification with a minimum of preprocessing and noramlization. Its pretty well known in handwriting recognition, and might be just right for what you're doing.
I'm a bit confused by the way you've chosen to break down the problem. If your coworker isn't identifying complete cracks, and that's the spec, then that makes it your problem. But if you manage to stitch all the cracks together, and avoid his false positives, then haven't you just done his job?
That aside, I think this is an edge detection problem rather than a classification problem. If the edge detector is good, then your issues go away.
If you are still set on classification, then you are going to need a training set with known answers, since you need a way to quantify what differentiates a false positive from a real crack. However I still think it is unlikely that your classifier will be able to connect the cracks, since these are specific to each individual paving slab.
I have to agree with ire_and_curses, once you dive into the realm of edge detection to patch your co-developers crack detection, and remove his false positives, it seems as if you would be doing his job. If you can patch what his software did not detect, and remove his false positives around what he has given you. It seems like you would be able to do this for the full image.
If the spec is for him to detect the cracks, and you classify them, then it's his job to do the edge detection and remove false positives. And your job to take what he has given you and classify what type of crack it is. If you have to do edge detection to do that, then it sounds like you are not far from putting your co-developer out of work.
There are some very good answers here. But if you are unable to solve the problem, you may consider Mechanical Turk. In some cases it can be very cost-effective for stubborn problems. I know people who use it for all kinds of things like this (verification that a human can do easily but proves hard to code).
https://www.mturk.com/mturk/welcome
I am no expert by any means, but try looking at Haar Cascades. You may also wish to experiment with the OpenCV toolkit. These two things together do face detection and other object-detection tasks.
You may have to do "training" to develop a Haar Cascade for cracks in pavement.
What’s the best approach to recognize patterns in data, and what’s the best way to learn more on the topic?
The best approach is to study pattern recognition and machine learning. I would start with Duda's Pattern Classification and use Bishop's Pattern Recognition and Machine Learning as reference. It would take a good while for the material to sink in, but getting basic sense of pattern recognition and major approaches of classification problem should give you the direction. I can sit here and make some assumptions about your data, but honestly you probably have the best idea about the data set since you've been dealing with it more than anyone. Some of the useful technique for instance could be support vector machine and boosting.
Edit: An interesting application of boosting is real-time face detection. See Viola/Jones's Rapid Object Detection using a Boosted Cascade of Simple
Features (pdf). Also, looking at the sample images, I'd say you should try improving the edge detection a bit. Maybe smoothing the image with Gaussian and running more aggressive edge detection can increase detection of smaller cracks.
I suggest you pick up any image processing textbook and read on the subject.
Particularly, you might be interested in Morphological Operations like Dilation and Erosion‎, which complements the job of an edge detector. Plenty of materials on the net...
This is an image processing problem. There are lots of books written on the subject, and much of the material in these books will go beyond a line-detection problem like this. Here is the outline of one technique that would work for the problem.
When you find a crack, you find some pixels that make up the crack. Edge detection filters or other edge detection methods can be used for this.
Start with one (any) pixel in a crack, then "follow" it to make a multipoint line out of the crack -- save the points that make up the line. You can remove some intermediate points if they lie close to a straight line. Do this with all the crack pixels. If you have a star-shaped crack, don't worry about it. Just follow the pixels in one (or two) directions to make up a line, then remove these pixels from the set of crack pixels. The other legs of the star will recognized as separate lines (for now).
You might perform some thinning on the crack pixels before step 1. In other words, check the neighbors of the pixels, and if there are too many then ignore that pixel. (This is a simplification -- you can find several algorithms for this.) Another preprocessing step might be to remove all the lines that are too thin or two faint. This might help with the false positives.
Now you have a lot of short, multipoint lines. For the endpoints of each line, find the nearest line. If the lines are within a tolerance, then "connect" the lines -- link them or add them to the same structure or array. This way, you can connect the close cracks, which would likely be the same crack in the concrete.
It seems like no matter the algorithm, some parameter adjustment will be necessary for good performance. Write it so it's easy to make minor changes in things like intensity thresholds, minimum and maximum thickness, etc.
Depending on the usage environment, you might want to allow user judgement do determine the questionable cases, and/or allow a user to review the all the cracks and click to combine, split or remove detected cracks.
You got some very good answer, esp. #Nate's, and all the links and books suggested are worthwhile. However, I'm surprised nobody suggested the one book that would have been my top pick -- O'Reilly's Programming Collective Intelligence. The title may not seem germane to your question, but, believe me, the contents are: one of the most practical, programmer-oriented coverage of data mining and "machine learning" I've ever seen. Give it a spin!-)
It sounds a little like a problem there is in Rock Mechanics, where there are joints in a rock mass and these joints have to be grouped into 'sets' by orientation, length and other properties. In this instance one method that works well is clustering, although classical K-means does seem to have a few problems which I have addressed in the past using a genetic algorithm to run the interative solution.
In this instance I suspect it might not work quite the same way. In this case I suspect that you need to create your groups to start with i.e. longitudinal, transverse etc. and define exactly what the behviour of each group is i.e. can a single longitudinal crack branch part way along it's length, and if it does what does that do to it's classification.
Once you have that then for each crack, I would generate a random crack or pattern of cracks based on the classification you have created. You can then use something like a least squares approach to see how closely the crack you are checking fits against the random crack / cracks you have generated. You can repeat this analysis many times in the manner of a Monte-Carlo analysis to identify which of the randomly generated crack / cracks best fits the one you are checking.
To then deal with the false positives you will need to create a pattern for each of the different types of false positives i.e. the edge of a kerb is a straight line. You will then be able to run the analysis picking out which is the most likely group for each crack you analyse.
Finally, you will need to 'tweak' the definition of different crack types to try and get a better result. I guess this could either use an automated approach or a manual approach depending on how you define your different crack types.
One other modification that sometimes helps when I'm doing problems like this is to have a random group. By tweaking the sensitivity of a random group i.e. how more or less likely a crack is to be included in the random group, you can sometimes adjust the sensitivty of the model to complex patterns that don't really fit anywhere.
Good luck, looks to me like you have a real challenge.
You should read about data mining, specially pattern mining.
Data mining is the process of extracting patterns from data. As more data are gathered, with the amount of data doubling every three years, data mining is becoming an increasingly important tool to transform these data into information. It is commonly used in a wide range of profiling practices, such as marketing, surveillance, fraud detection and scientific discovery.
A good book on the subject is Data Mining: Practical Machine Learning Tools and Techniques
(source: waikato.ac.nz) ](http://www.amazon.com/Data-Mining-Ian-H-Witten/dp/3446215336 "ISBN 0-12-088407-0")
Basically what you have to do is apply statistical tools and methodologies to your datasets. The most used comparison methodologies are Student's t-test and the Chi squared test, to see if two unrelated variables are related with some confidence.

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