I'm trying to uninstall/re-install my development dependencies via homebrew and brew doctor is giving me the following errors:
Robs-MacBook-Pro:~ robcate$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: /usr/local/Cellar isn't writable.
You should probably change the ownership and permissions of /usr/local/Cellar
back to your user account.
sudo chown -R $(whoami) /usr/local/Cellar
Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected header files:
/usr/local/include/node/ares.h
/usr/local/include/node/ares_version.h
/usr/local/include/node/nameser.h
/usr/local/include/node/node.h
/usr/local/include/node/node_buffer.h
/usr/local/include/node/node_internals.h
/usr/local/include/node/node_object_wrap.h
/usr/local/include/node/node_version.h
/usr/local/include/node/openssl/opensslconf.h
/usr/local/include/node/uv-private/ngx-queue.h
/usr/local/include/node/uv-private/stdint-msvc2008.h
/usr/local/include/node/uv-private/tree.h
/usr/local/include/node/uv-private/uv-bsd.h
/usr/local/include/node/uv-private/uv-darwin.h
/usr/local/include/node/uv-private/uv-linux.h
/usr/local/include/node/uv-private/uv-sunos.h
/usr/local/include/node/uv-private/uv-unix.h
/usr/local/include/node/uv-private/uv-win.h
/usr/local/include/node/uv.h
/usr/local/include/node/v8-debug.h
/usr/local/include/node/v8-preparser.h
/usr/local/include/node/v8-profiler.h
/usr/local/include/node/v8-testing.h
/usr/local/include/node/v8.h
/usr/local/include/node/v8stdint.h
/usr/local/include/node/zconf.h
/usr/local/include/node/zlib.h
Robs-MacBook-Pro:~ robcate$ sudo chown -R $(robcate) /usr/local/Cellar
-bash: robcate: command not found
usage: chown [-fhv] [-R [-H | -L | -P]] owner[:group] file ...
chown [-fhv] [-R [-H | -L | -P]] :group file ...
Can anyone point me in the right direction to fix these?
Related
I've tried to install nix-linter with 3 way. None works
nix package manager
nix-env -iA nixpkgs.nix-linter
Package is marked as broken, refusing to evaluate.
It propose me several option to add broken package ( export NIXPKGS_ALLOW_BROKEN=1 ). But I don't understand exactly what will be the repercutions. I prefer not to follow this option
with cachix
I follow this tutorial
and add this line
echo "trusted-users = root myusername" | sudo tee -a /etc/nix/nix.conf && sudo pkill nix-daemon
normally after cachix use nix-linter there is a cache that nix-build use
But it doesn't work. I get an error saying that there is no default.nix in my repository
https://github.com/Synthetica9/nix-linter
cachix use nix-linter
git clone https://github.com/Synthetica9/nix-linter
cd nix-linter
$(nix-build -A nix-linter)/bin/nix-linter --help
error: attribute 'nix-linter' in selection path 'nix-linter' not found
-bash: /bin/nix-linter: No such file or directory
somebody from cacheix said that this package is no longer maintain and I should try statix.
statix works
I have downloaded the deb file from the https://support.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfview-3.1.2/bin/ link and install it via
sudo dpkg -i hdfview_3.1.2-1_amd64.deb
I didn't see any error during installation.
But hdfview didn't open.
I am using java-1.11.0-openjdk and hdf5-1.10.
How to solve this problem?
I found a way to solve this. The program gets installed in /opt/hdfview. However, starting it causes the error
$ ./bin/HDFView
Error: dl failure on line 534
Error: failed /opt/hdfview/lib/runtime/lib/server/libjvm.so, because /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by /opt/hdfview/lib/runtime/lib/server/libjvm.so)
Failed to launch JVM
We can fix this by patching the libjvm.so file:
Install java-15 if it is not present already:
sudo apt install openjdk-15-jre
Find the libjvm.so file:
cd /usr/lib
find . -name libjvm.so
In my case, the correct version is located in /usr/lib/jvm/java-15-openjdk-amd64/lib/server/libjvm.so
Replace the libjvm.so in hdfview with a symlink to this libjvm.so
cd /opt/hdfview/lib/runtime/lib/server
sudo mv libjvm.so libjvm.so.bak
sudo ln -s /usr/lib/jvm/java-15-openjdk-amd64/lib/server/libjvm.so libjvm.so
(optional) link the hdfview binary, so that it is found in the terminal
sudo ln -s /opt/hdfview/bin/HDFView /usr/local/bin/hdfview
Afterwards, you should be able to start hdfview both from the terminal and the icon.
Hello i have a problem with HomeBrew . I issue a command :
Ahmet-MacBook:libmbdb ahmetmahmodo$ brew link openssl --force
Warning: Refusing to link: openssl
Linking keg-only openssl means you may end up linking against the insecure,
deprecated system OpenSSL while using the headers from Homebrew's openssl.
Instead, pass the full include/library paths to your compiler e.g.:
-I/usr/local/opt/openssl/include -L/usr/local/opt/openssl/lib
Ahmet-MacBook:libmbdb ahmetmahmudo$
What should i do ?
I need this command . I reject compile with -I and -L command
Create a symlink :
ln -s /usr/local/Cellar/openssl/{version}/include/openssl /usr/local/include/openssl
I keep running lb build, fixing problem after problem and then running it again, and now i'm getting this message:
dpkg: warning: 'start-stop-daemon' not found in PATH or not executable
dpkg: error: 1 expected program not found in PATH or not executable
Note: root's PATH should usually contain /usr/local/sbin, /usr/sbin and /sbin
E: Sub-process /usr/bin/dpkg returned an error code (2)
P: Begin unmounting filesystems...
P: Saving caches...
Reading package lists... Done
Building dependency tree... Done
I then went to check my path and i see
/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
This clearly shows /usr/local/sbin, /usr/sbin, and /sbin.
Any suggestions?
**UPDATE 1**
Followed this guide
http://ubuntuforums.org/showthread.php?t=1449322
every command ran fine but still the same error message after running lb build again.
**UPDATE 2 -- Additional Info**
root#kali:~# ls -lA /sbin
(Other files)
-rwxr-xr-x 1 root root 28208 Aug 12 15:00 start-stop-daemon
First, you must check the feedback information from the first line (although it is just a warning).
Then， you must have understand that the warning is the key. All the mistakes are caused by this warning. You have to add start-stop-daemon to your pc.
According to the following:
cd /tmp
wget http://developer.axis.com/download/distribution/apps-sys-utils-start-stop-daemon-IR1_9_18-2.tar.gz
tar zxf apps-sys-utils-start-stop-daemon-IR1_9_18-2.tar.gz
cd apps/sys-utils/start-stop-daemon-IR1_9_18-2/
gcc start-stop-daemon.c -o start-stop-daemon
cp start-stop-daemon /usr/local/bin/start-stop-daemon
Now you can help yourself，and others
I have the same problem, according to https://debianforum.de/forum/viewtopic.php?f=34&t=155279 (in german) the only known solution is to run sudo lb clean before sudo lb build.
Getting an error when I try to install dos2unix via homebrew. brew doctor has no suggestions, and other install work like a charm. No idea where to start tracing it.
$ brew install dos2unix
==> Downloading http://waterlan.home.xs4all.nl/dos2unix/dos2unix-6.0.3.tar.gz
Already downloaded: /Library/Caches/Homebrew/dos2unix-6.0.3.tar.gz
==> make prefix=/usr/local/Cellar/dos2unix/6.0.3 CC=cc CPP=cc CFLAGS= CFLAGS_OS=
cc -DVER_REVISION=\"6.0.3\" -DVER_DATE=\"2013-01-25\" -DVER_AUTHOR=\"'Erwin Waterlander'\" -DDEBUG=0 -I/usr/local/Cellar/gettext/0.18.3.1/include -DD2U_UNICODE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DENABLE_NLS -DLOCALEDIR=\"/usr/local/Cellar/dos2unix/6.0.3/share/locale\" -DPACKAGE=\"dos2unix\" -c unix2dos.c -o unix2dos.o
pod2text man/man1/dos2unix.pod > man/man1/dos2unix.txt
/bin/sh: /usr/bin/pod2text: Permission denied
make: *** [man/man1/dos2unix.txt] Error 126
make: *** Waiting for unfinished jobs....
On my system /usr/bin/pod2text had no execution rights. After changing that by executing the following command I had no problem installing dos2unix:
sudo chmod +x /usr/bin/pod2text